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Botany/PlantPath 563

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Reproducibility
Alignment I
Alignment II
Alignment (ClustalW)
Alignment (MUSCLE, MAFFT)
Phylogenetic Inference
Distance and Parsimony I
Distance and Parsimony II
Distance and Parsimony III
Models of Evolution
Maximum Likelihood
Maximum Likelihood (RAxML)
Maximum Likelihood (IQ-Tree)
Bayesian Inference
Bayesian Inference (MrBayes)
Tree Visualization
The coalescent (trees)
The coalescent (ASTRAL)
The coalescent (networks)
Co-estimation I
Co-estimation II
Other topics

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Materials on GitHub

The coalescent (networks)

We will go over the slides in here.

Optional Computer Lab

You can follow the SNaQ tutorial on your own to learn more!

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